AI-assisted medical image segmentation built by radiologists. Pretrained CT and MRI models, nnInteractive, custom nnU-Net training, DICOM and NIfTI. Free for research.
Hey,
we built MedSeg because medical image segmentation has been personally slow and inapproachable: download multi-GB software, fight CUDA drivers, hope the model runs on your scan, data management...etc. Having experience in helping research groups achieve their goals by using AI models iteratively, we wanted a full workspace where the data is stored in a tidy way and where you can train and run models.
So that's what this is. Drag a CT or MRI into a project, run one of several segmentation runs on a GPU on our side, and get a 3D result in a few minutes. You can refine the masks in an in-browser editor, share with a colleague, or even open it in VR. For research groups, they can work on the manual segmentation part in an editor created by radiologists. Then, once a few cases are done, they can train a model and run it on new cases, then correct them, start training again in an iterative loop, using state of the art nnUnet v2 architecture.
What it's not: a regulatory-cleared clinical tool. This is for research, education, and exploration — not diagnosis.
The stack is TotalSegmentator + FastSurfer + around 6 other open models + a custom web-based editor, with WebGL, running on a small GPU box. Happy to answer anything technical or walk through specific use cases.
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